Device

Part:BBa_K1172905:Design

Designed by: Tore Bleckwehl   Group: iGEM13_Bielefeld-Germany   (2013-09-19)

Part 1 of the Biosafety-System araCtive


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 1374
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 1298
    Illegal BamHI site found at 2000
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 1416
    Illegal AgeI site found at 1716
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 1173


Design Notes

  • Amplification of the rhamnose promoter PRha (BBa_K194004) with its pSB1C3 backbone using specific Gibson-Primer:
pRhA_rev (41 bp)

5'-TTGTTTCTCCTCTTTCTAGTATTCATTACGACCAGTCTAAA-3'

pSB1C3_rha_suf (42 bp)

5'-GTGGGCCTTTCTGCGTTTATATACTAGTAGCGGCCGCTGCAG-3'
  • Amplification of the repressor AraC with Gibson-Primer containing the RBS (BBa_B0034):
araC_fwd (46 bp)

5'-TACTAGAAAGAGGAGAAACAAATGGCTGAAGCGCAAAATGATCCCC-3'

araC_rev (21 bp)

5'-TTATGACAACTTGACGGCTAC-3'


alr_araC_1 (67 bp)

5'GTAGCCGTCAAGTTGTCATAATACTAGAAAGAGGAGAAATACTAGATGCAAGCGGCAACTGTTGTG-3'

alr_araC_2 (42 bp)

5'-CTGCAGCGGCCGCTACTAGTA-3'


  • Ligation via [http://2013.igem.org/Team:Bielefeld-Germany/Labjournal/ProtocolsPrograms#Gibson_assembly Gibson-Assembly].



Source

BBa_K194004
AraC [http://2013.igem.org/Team:Bielefeld-Germany/Labjournal/ProtocolsPrograms#Whole_Genome_Isolation genome isolation] from E. coli.
BBa_K1172903


References